STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGEO_05220Hypothetical protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)    
Predicted Functional Partners:
MGEO_05250
Branched-chain amino acid ABC transporter substrate-binding protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.870
MGEO_05240
ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
     0.846
MGEO_05245
Branched-chain amino acid ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
     0.810
MGEO_05235
ABC transporter; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
MGEO_05230
Branched-chain amino acid ABC transporter; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
MGEO_05225
Aldehyde dehydrogenase; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
MGEO_08735
Membrane protein; HflC and HflK could encode or regulate a protease.
     
 0.743
MGEO_05280
TRAP transporter; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
MGEO_05790
NADH dehydrogenase; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.566
MGEO_06085
Hypothetical protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
Your Current Organism:
Marivita geojedonensis
NCBI taxonomy Id: 1123756
Other names: CCUG 62112, KCTC 23882, M. geojedonensis, Marivita geojedonensis Yoon et al. 2013, Marivita sp. DPG-138, strain DPG-138
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