STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGEO_13175Hypothetical protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (256 aa)    
Predicted Functional Partners:
MGEO_13180
Hypothetical protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.930
MGEO_13170
Amino acid transporter; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.924
MGEO_16915
Amino acid ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.905
MGEO_13185
Amino acid ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; with HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.888
MGEO_10130
Nickel transporter; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.883
MGEO_10135
Amino acid ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.881
MGEO_08640
ATP-binding protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.871
MGEO_16830
Amino acid ABC transporter permease; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.864
MGEO_16825
Hypothetical protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.856
MGEO_07740
ABC transporter ATP-binding protein; Bacteria available from KCTC 23882. Source DNA available from KCTC 23882; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.855
Your Current Organism:
Marivita geojedonensis
NCBI taxonomy Id: 1123756
Other names: CCUG 62112, KCTC 23882, M. geojedonensis, Marivita geojedonensis Yoon et al. 2013, Marivita sp. DPG-138, strain DPG-138
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