STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO25539.1Hypothetical protein. (229 aa)    
Predicted Functional Partners:
SFO25513.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.811
SFO25562.1
Transcriptional regulator, TetR family.
 
     0.784
SFO33628.1
EspG family protein.
  
     0.769
SFQ39619.1
Hypothetical protein.
  
     0.769
SFQ48051.1
Hypothetical protein.
  
     0.767
SFO33589.1
EspG family protein.
  
     0.764
SFQ65886.1
Hypothetical protein.
  
     0.764
SFO31475.1
Hypothetical protein.
  
     0.763
SFQ35475.1
Hypothetical protein.
  
     0.762
SFO33546.1
Hypothetical protein.
  
     0.761
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.