STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO30326.1RNA polymerase sigma factor, sigma-70 family. (403 aa)    
Predicted Functional Partners:
SFO30303.1
Uncharacterized conserved protein.
 
     0.947
SFP85605.1
Uncharacterized conserved protein.
 
     0.778
SFQ63845.1
Uncharacterized conserved protein.
 
     0.777
SFO07537.1
Uncharacterized conserved protein.
 
     0.776
SFQ79953.1
YCII-related domain-containing protein.
 
     0.776
SFQ59768.1
Uncharacterized conserved protein.
 
     0.774
SFQ51698.1
Uncharacterized conserved protein.
 
     0.762
SFO36434.1
Uncharacterized conserved protein.
 
     0.761
SFO36452.1
Uncharacterized conserved protein.
 
     0.759
SFO55343.1
Uncharacterized conserved protein.
 
     0.709
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.