STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO35941.1Transcriptional regulator, XRE family with cupin sensor. (200 aa)    
Predicted Functional Partners:
SFO35966.1
Na+/melibiose symporter.
       0.773
SFP63325.1
Helix-turn-helix.
  
     0.577
SFO35918.1
Membrane protein.
       0.568
SFP14660.1
Thioredoxin reductase.
 
    0.489
SFO35988.1
Vanillate O-demethylase ferredoxin subunit.
       0.455
SFO36010.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.425
SFO36026.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
       0.425
SFO36047.1
Ring hydroxylating alpha subunit (catalytic domain).
       0.425
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.420
SFO36071.1
Hypothetical protein.
       0.415
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.