STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO11907.1rhamnopyranosyl-N-acetylglucosaminyl-diphospho- decaprenol beta-1,3/1,4-galactofuranosyltransferase. (303 aa)    
Predicted Functional Partners:
SFO11864.1
ABC-2 type transport system permease protein.
 
  
 0.988
SFO12095.1
galactofuranosylgalactofuranosylrhamnosyl-N- acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase.
 
  
 0.982
SFO64578.1
ABC-2 type transport system permease protein.
 
  
 0.952
SFO11883.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.943
SFO12473.1
UDP-galactopyranose mutase.
 
  
 0.869
SFQ35494.1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
  
  
 0.784
SFO14121.1
Protein of unknown function.
  
     0.757
SFQ38524.1
Hypothetical protein.
  
     0.730
SFQ17249.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.729
SFQ66651.1
Hypothetical protein.
  
     0.719
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.