STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO15980.1FAD-linked oxidoreductase. (433 aa)    
Predicted Functional Partners:
SFO15949.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
    0.903
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
  0.727
SFP13597.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.686
SFP13637.1
Electron transfer flavoprotein beta subunit.
  
 
 0.686
SFQ01452.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.685
SFQ59035.1
D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family.
   
 
  0.670
SFQ43613.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.635
SFQ52851.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.635
SFN97880.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.615
SFO39312.1
Glutamine cyclotransferase.
    
   0.609
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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