STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO16471.1DNA-binding transcriptional regulator, FadR family. (245 aa)    
Predicted Functional Partners:
SFQ64008.1
DNA-binding transcriptional regulator, FadR family.
  
     0.765
SFO16276.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
  0.715
SFO16446.1
Peptide/nickel transport system substrate-binding protein.
 
     0.693
SFO16307.1
Acyl-CoA reductase.
 
  
  0.645
SFO25674.1
DNA-binding transcriptional regulator, FadR family.
  
     0.641
SFO28550.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.633
SFO28604.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.625
SFO16388.1
Peptide/nickel transport system permease protein.
 
     0.625
SFO16415.1
Peptide/nickel transport system permease protein.
 
     0.622
SFP37530.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.622
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.