STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO70153.1LPXTG-motif cell wall anchor domain-containing protein/TQXA domain-containing protein. (377 aa)    
Predicted Functional Partners:
SFO01724.1
AAA domain-containing protein.
  
     0.723
SFO03036.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
  0.681
SFO36119.1
PAS domain S-box-containing protein.
   
 0.675
SFO11956.1
Hypothetical protein.
 
   
 0.627
SFO62324.1
Hypothetical protein.
  
     0.607
SFO15705.1
Hypothetical protein.
  
     0.587
SFQ81469.1
Hypothetical protein.
  
     0.585
SFP27212.1
Hypothetical protein.
 
     0.558
SFO69147.1
Hypothetical protein.
  
     0.550
SFO59110.1
Phospholipase A2.
  
     0.534
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.