STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO63480.1Creatinine amidohydrolase. (241 aa)    
Predicted Functional Partners:
SFQ75916.1
Mycofactocin system glycosyltransferase.
 
  
 0.877
SFO63524.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.848
SFO63496.1
Hypothetical protein.
 
     0.841
SFO63510.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.826
SFO53921.1
Hypothetical protein.
 
  
  0.669
SFO53892.1
Hypothetical protein.
 
  
  0.661
SFO53907.1
Hypothetical protein.
 
  
  0.632
SFP61656.1
Cytosine/adenosine deaminase.
 
  
  0.602
SFQ75954.1
Putative mycofactocin binding protein MftB.
 
   
 0.595
SFN91737.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
  
 0.532
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.