STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO66207.1Act minimal PKS ketosynthase (KS/KS alpha); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (397 aa)    
Predicted Functional Partners:
accD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 
 0.984
SFN92121.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
 
 
 0.978
SFO56181.1
Polyene macrolide polyketide synthase/pimaricinolide synthase PimS1.
  
0.974
SFO56251.1
Glutamate mutase subunit E.
  
 0.974
SFQ72584.1
[acyl-carrier-protein] S-malonyltransferase.
 
 0.957
SFO55726.1
Acyl transferase domain-containing protein.
0.955
SFP97437.1
Amino acid adenylation domain-containing protein.
 
 0.954
SFQ04998.1
[acyl-carrier-protein] S-malonyltransferase.
 
 0.935
SFO66186.1
Act minimal PKS chain-length factor (CLF/KS beta); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 
0.934
SFP67524.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase.
 
 0.933
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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