STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP20384.1Cysteine synthase A. (325 aa)    
Predicted Functional Partners:
SFP20359.1
Ornithine cyclodeaminase.
 
 
 0.972
SFO61912.1
Serine O-acetyltransferase.
 
 0.930
SFO68918.1
Cystathionine gamma-synthase.
 
 0.912
SFO16559.1
Cystathionine gamma-synthase.
 
 0.901
SFO61803.1
Cysteine synthase A.
  
  
  0.899
SFO96886.1
Ornithine cyclodeaminase.
 
 
 0.885
SFO62213.1
Methionine-gamma-lyase.
 
 0.870
SFO61932.1
Cysteine synthase A.
  
  
  0.848
cysC
Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
  
 0.846
SFO52259.1
Unspecific monooxygenase; Belongs to the cytochrome P450 family.
  
 0.796
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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