Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFP69064.1Hydrogenase expression/formation protein HypE. (358 aa)    
Predicted Functional Partners:
SFP69093.1
Hydrogenase expression/formation protein HypD.
 
 
 0.999
SFP69123.1
Hydrogenase maturation protein HypC.
 
 
 0.996
SFP68964.1
Hydrogenase maturation protein HypF.
 
 
 0.983
SFP68999.1
Hydrogenase nickel incorporation protein HypB.
 
  
 0.973
hypA
Hydrogenase nickel incorporation protein HypA/HybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.973
SFP69460.1
Hydrogenase expression/formation protein HypC.
  
 
 0.941
SFP69185.1
Hydrogenase maturation protease.
 
   
 0.935
SFP69388.1
Hydrogenase small subunit.
 
   
 0.924
SFP69350.1
Hydrogenase large subunit.
 
   
 0.913
SFP69219.1
Hypothetical protein.
 
   
 0.766
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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