STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP71185.15,10-methylenetetrahydromethanopterin reductase. (333 aa)    
Predicted Functional Partners:
SFQ35331.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
  
 0.787
SFQ35303.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.782
SFP66455.1
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
  
     0.769
SFP67866.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
     0.765
SFQ01367.1
Luciferase-like monooxygenase.
  
     0.763
SFN96767.1
Probable F420-dependent oxidoreductase, Rv1855c family.
  
     0.758
SFO25118.1
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.755
SFN96736.1
Probable F420-dependent oxidoreductase, Rv1855c family.
  
     0.752
SFO63048.1
Probable F420-dependent oxidoreductase, Rv2161c family.
  
     0.742
SFQ69241.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.739
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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