STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP62481.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
SFO03244.1
Hypothetical protein.
  
     0.772
SFQ36809.1
Hypothetical protein.
  
     0.772
SFP52964.1
Hypothetical protein.
  
     0.767
SFO20108.1
Hypothetical protein.
  
     0.762
SFO21126.1
Hypothetical protein.
  
     0.760
SFO23517.1
Hypothetical protein.
  
     0.760
SFO33589.1
EspG family protein.
  
     0.757
SFQ72651.1
Hypothetical protein.
  
     0.757
SFO15705.1
Hypothetical protein.
  
     0.754
SFO25295.1
PPE family protein.
  
     0.752
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.