STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP62596.1Transcriptional regulator, IclR family. (247 aa)    
Predicted Functional Partners:
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
       0.778
SFP62657.1
Arginine/lysine/histidine/glutamine transport system substrate-binding and permease protein.
       0.773
SFP62696.1
Polar amino acid transport system ATP-binding protein.
       0.773
SFQ79628.1
Transcriptional regulator, IclR family.
  
     0.768
SFQ21038.1
Transcriptional regulator, IclR family.
  
     0.766
SFQ58633.1
Transcriptional regulator, IclR family.
  
     0.766
SFO98242.1
Transcriptional regulator, IclR family.
  
     0.764
SFQ77204.1
Transcriptional regulator, IclR family.
  
     0.764
SFO70237.1
Transcriptional regulator, IclR family.
  
     0.763
SFP47276.1
Transcriptional regulator, IclR family.
  
     0.763
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.