STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP86025.1Hypothetical protein. (356 aa)    
Predicted Functional Partners:
SFP18743.1
Thioredoxin reductase (NADPH).
   
 
  0.577
SFP90200.1
Histidine kinase-like ATPase domain-containing protein.
   
 
  0.556
SFO03165.1
Hypothetical protein.
  
     0.540
SFQ51782.1
FO synthase subunit 1 /FO synthase subunit 2.
   
    0.530
SFN96078.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
    0.502
SFP41376.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
    0.502
SFP42238.1
Hypothetical protein.
    
  0.489
SFQ77177.1
Cobaltochelatase CobT.
    
  0.489
SFQ49129.1
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.483
SFQ71325.1
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.483
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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