STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP86972.1D-amino peptidase. (286 aa)    
Predicted Functional Partners:
SFP86997.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
 
     0.821
SFP12563.1
D-amino peptidase.
  
     0.746
SFP86944.1
Peptide/nickel transport system substrate-binding protein.
 
     0.725
SFP86870.1
Peptide/nickel transport system permease protein.
 
    0.664
SFP86893.1
Peptide/nickel transport system permease protein.
 
    0.650
SFP86843.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.605
SFP86916.1
Hypothetical protein.
       0.532
SFP86814.1
Alpha-1,6-mannosyltransferase.
       0.401
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.