STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ51795.1PucR C-terminal helix-turn-helix domain-containing protein. (321 aa)    
Predicted Functional Partners:
SFQ51812.1
Acetyl esterase/lipase.
 
     0.791
SFQ36400.1
Transcriptional regulatory protein, C terminal.
  
    0.549
SFQ37726.1
Cytochrome P450.
  
    0.506
SFQ51828.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.487
SFQ19976.1
Hypothetical protein.
  
    0.486
SFQ75669.1
Protein of unknown function DUF87.
  
     0.482
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
     0.403
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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