Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFP22279.1 | SFQ66843.1 | SAMN05421854_104435 | SAMN05421854_118125 | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | ATP-dependent Clp protease ATP-binding subunit ClpX. | 0.929 |
SFP22279.1 | clpP | SAMN05421854_104435 | SAMN05421854_104434 | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.994 |
SFP22279.1 | clpP-3 | SAMN05421854_104435 | SAMN05421854_113148 | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.974 |
SFP22279.1 | ftsH | SAMN05421854_104435 | SAMN05421854_1011545 | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.587 |
SFP22279.1 | lon | SAMN05421854_104435 | SAMN05421854_101157 | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.674 |
SFP46875.1 | SFQ66843.1 | SAMN05421854_105361 | SAMN05421854_118125 | Peptide-methionine (R)-S-oxide reductase. | ATP-dependent Clp protease ATP-binding subunit ClpX. | 0.621 |
SFQ66807.1 | SFQ66819.1 | SAMN05421854_118122 | SAMN05421854_118123 | Hypothetical protein. | Predicted phosphoesterase. | 0.686 |
SFQ66807.1 | SFQ66831.1 | SAMN05421854_118122 | SAMN05421854_118124 | Hypothetical protein. | Hypothetical protein. | 0.686 |
SFQ66807.1 | SFQ66843.1 | SAMN05421854_118122 | SAMN05421854_118125 | Hypothetical protein. | ATP-dependent Clp protease ATP-binding subunit ClpX. | 0.541 |
SFQ66819.1 | SFQ66807.1 | SAMN05421854_118123 | SAMN05421854_118122 | Predicted phosphoesterase. | Hypothetical protein. | 0.686 |
SFQ66819.1 | SFQ66831.1 | SAMN05421854_118123 | SAMN05421854_118124 | Predicted phosphoesterase. | Hypothetical protein. | 0.953 |
SFQ66819.1 | SFQ66843.1 | SAMN05421854_118123 | SAMN05421854_118125 | Predicted phosphoesterase. | ATP-dependent Clp protease ATP-binding subunit ClpX. | 0.605 |
SFQ66831.1 | SFQ66807.1 | SAMN05421854_118124 | SAMN05421854_118122 | Hypothetical protein. | Hypothetical protein. | 0.686 |
SFQ66831.1 | SFQ66819.1 | SAMN05421854_118124 | SAMN05421854_118123 | Hypothetical protein. | Predicted phosphoesterase. | 0.953 |
SFQ66831.1 | SFQ66843.1 | SAMN05421854_118124 | SAMN05421854_118125 | Hypothetical protein. | ATP-dependent Clp protease ATP-binding subunit ClpX. | 0.613 |
SFQ66843.1 | SFP22279.1 | SAMN05421854_118125 | SAMN05421854_104435 | ATP-dependent Clp protease ATP-binding subunit ClpX. | ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family. | 0.929 |
SFQ66843.1 | SFP46875.1 | SAMN05421854_118125 | SAMN05421854_105361 | ATP-dependent Clp protease ATP-binding subunit ClpX. | Peptide-methionine (R)-S-oxide reductase. | 0.621 |
SFQ66843.1 | SFQ66807.1 | SAMN05421854_118125 | SAMN05421854_118122 | ATP-dependent Clp protease ATP-binding subunit ClpX. | Hypothetical protein. | 0.541 |
SFQ66843.1 | SFQ66819.1 | SAMN05421854_118125 | SAMN05421854_118123 | ATP-dependent Clp protease ATP-binding subunit ClpX. | Predicted phosphoesterase. | 0.605 |
SFQ66843.1 | SFQ66831.1 | SAMN05421854_118125 | SAMN05421854_118124 | ATP-dependent Clp protease ATP-binding subunit ClpX. | Hypothetical protein. | 0.613 |
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