STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ68628.1Taurine dioxygenase, alpha-ketoglutarate-dependent. (348 aa)    
Predicted Functional Partners:
SFQ68557.1
Nonribosomal peptide synthetase protein BlmV.
  
 0.969
SFQ68547.1
Nonribosomal peptide synthetase protein BlmVI.
  
 0.925
SFQ68538.1
Nonribosomal peptide synthetase protein BlmVII.
    0.910
SFQ68511.1
Nonribosomal peptide synthetase protein BlmX.
    0.904
SFQ68652.1
Uncharacterized conserved protein YbdZ, MbtH family.
 
   
 0.895
SFQ68521.1
Nonribosomal peptide synthetase protein BlmIX; Belongs to the ATP-dependent AMP-binding enzyme family.
    0.894
SFQ68596.1
Nonribosomal peptide synthetase protein BlmIV.
  
 0.894
SFQ68605.1
Nonribosomal peptide synthetase protein BlmIII.
  
 0.883
SFP60781.1
Amino acid adenylation domain-containing protein.
 
 0.867
SFQ68576.1
Aspartyl/Asparaginyl beta-hydroxylase.
 
     0.864
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.