STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ79321.1Putative spermidine/putrescine transport system permease protein. (293 aa)    
Predicted Functional Partners:
SFQ79310.1
Putative spermidine/putrescine transport system permease protein.
 
 0.999
SFQ79328.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.995
SFQ79301.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.993
SFQ65740.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.986
SFQ65719.1
Putative spermidine/putrescine transport system permease protein.
 
 0.982
SFQ65750.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.975
SFP50234.1
2-aminoethylphosphonate transport system permease protein.
 
 
 0.968
SFO52339.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.958
SFP50296.1
2-aminoethylphosphonate transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.954
SFO67564.1
Thiamine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.939
Your Current Organism:
Amycolatopsis rubida
NCBI taxonomy Id: 112413
Other names: A. rubida, Amycolatopsis rubida Huang et al. 2001, Amycolatopsis sp. 13.4, CIP 107102, DSM 44637, JCM 10871, NBRC 100041, NRRL B-24150, strain 13.4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.