STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF36906.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
SHF36935.1
Hypothetical protein.
       0.625
SHF36955.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.625
SHF36884.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.548
SHF36976.1
BetR domain-containing protein.
       0.493
Your Current Organism:
Flavobacterium fontis
NCBI taxonomy Id: 1124188
Other names: DSM 25660, F. fontis, Flavobacterium fontis Chun et al. 2013, Flavobacterium sp. MIC3010, JCM 18212, KACC 16593, strain MIC3010
Server load: low (30%) [HD]