STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCC_00566Uncharacterized protein. (637 aa)    
Predicted Functional Partners:
RCC_09731
Nuclear cap-binding protein subunit 2.
    
 0.630
RCC_07184
ATP-dependent RNA helicase fal-1; Belongs to the DEAD box helicase family.
   
 0.629
RCC_07918
Related to nuclear cap-binding complex, subunit NCBP1/CBP80.
    
 0.628
RCC_08123
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.627
RCC_12092
Related to Polyadenylate-binding protein, cytoplasmic and nuclear.
    
 0.626
RCC_03778
Probable eukaryotic translation initiation factor 2 gamma subunit.
   
 0.619
RCC_00150
Related to DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
  0.614
RCC_05611
Probable eukaryotic translation initiation factor 2 subunit alpha.
   
 0.611
RCC_10464
Related to DNA-directed RNA polymerase II chain.
    
 0.606
RCC_01752
Probable DNA-directed RNA polymerase II chain RPB10.
    
  0.603
Your Current Organism:
Ramularia collocygni
NCBI taxonomy Id: 112498
Other names: CBS 101180, Ophiocladium hordei, Ovularia hordei, R. collo-cygni, Ramularia collo-cygni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.