STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCC_08605Uncharacterized protein. (276 aa)    
Predicted Functional Partners:
RCC_08570
Related to SFH1 subunit of the RSC complex.
    
 0.779
RCC_05794
Related to chromatin remodeling factor subunit and related transcription factors.
    
 0.710
RCC_07005
Related to SWI/SNF transcription activation complex subunit.
    
 0.708
RCC_08990
Related to actin; Belongs to the actin family.
    
 0.708
RCC_10327
Uncharacterized protein.
  
 
 0.666
RCC_00030
Related to SWI-SNF complex subunit (Snf5).
    
 0.640
RCC_04109
Related to UAF30-subunit of RNA polymerase I transcription factor.
    
 0.634
RCC_09059
Related to RSC complex subunit (RSC1).
    
 0.632
RCC_05404
Uncharacterized protein.
    
 0.632
RCC_05581
RRM domain-containing protein.
    
  0.602
Your Current Organism:
Ramularia collocygni
NCBI taxonomy Id: 112498
Other names: CBS 101180, Ophiocladium hordei, Ovularia hordei, R. collo-cygni, Ramularia collo-cygni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.