STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF29850.1ArgE/DapE family peptidase. (387 aa)    
Predicted Functional Partners:
EPF28398.1
Diaminopropionate ammonia-lyase.
 
 0.929
EPF27931.1
Hypothetical protein.
 
 
 0.860
EPF27943.1
ArgE/DapE family peptidase.
  
  
 
0.710
EPF30156.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.675
rnfB
Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.672
arcA
Arginine deiminase.
  
 
 0.621
EPF28294.1
NAD+ synthetase.
   
 0.608
EPF29753.1
Hypothetical protein.
  
  
 
0.604
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.604
EPF29328.1
Inosine-5'-monophosphate dehydrogenase.
     
 0.600
Your Current Organism:
Treponema medium
NCBI taxonomy Id: 1125700
Other names: T. medium ATCC 700293, Treponema medium ATCC 700293
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.