STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERF59448.1Permease, cytosine/purine, uracil, thiamine, allantoin family. (429 aa)    
Predicted Functional Partners:
ERF61190.1
Response regulator receiver domain protein; Overlaps another CDS with the same product name.
    
  0.780
ERF59446.1
Isochorismatase family protein.
       0.691
ERF59454.1
Permease, cytosine/purine, uracil, thiamine, allantoin family.
 
    
0.616
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.613
pyrI
Aspartate carbamoyltransferase regulatory chain, allosteric domain/aspartate carbamoyltransferase regulatory chain, metal-binding domain multi-domain protein.
   
    0.608
carB
Carbamoyl-phosphate synthase large chain; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the CarB family.
   
    0.537
ERF59517.1
Putative flavoredoxin.
       0.457
ERF60044.1
Uracil phosphoribosyltransferase.
   
  
 0.448
nifJ
Pyruvate synthase.
      
 0.426
Your Current Organism:
Treponema socranskii VPIDR56BR1116
NCBI taxonomy Id: 1125725
Other names: T. socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536, Treponema socranskii subsp. socranskii ATCC 35536, Treponema socranskii subsp. socranskii ATCC 35536 = VPI DR56BR1116, Treponema socranskii subsp. socranskii VPI DR56BR1116, Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536
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