STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAJ32310.1Hypothetical protein sll0103; Q55874, evalue=5e-09. (722 aa)    
Predicted Functional Partners:
GAJ32309.1
Hypothetical protein yhcS; P54603, evalue=1e-12.
 
   
 0.890
GAJ36340.1
Hypothetical protein.
  
     0.559
GAJ32885.1
Uncharacterized protein conserved in bacteria.
  
     0.526
GAJ36339.1
Hypothetical protein.
  
     0.517
GAJ32311.1
Hypothetical protein.
       0.488
GAJ35853.1
Hypothetical protein.
    
  0.446
GAJ31014.1
Hypothetical protein.
  
     0.425
GAJ35925.1
DNA-binding protein MJ1563; Q58958, evalue=2e-09.
  
     0.409
Your Current Organism:
Bradyrhizobium sp. DOA9
NCBI taxonomy Id: 1126627
Other names: B. sp. DOA9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.