STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_0168Secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (359 aa)    
Predicted Functional Partners:
GLIP_0167
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.973
GLIP_0169
RND efflux system outer membrane lipoprotein.
 
  0.917
GLIP_3950
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.842
GLIP_2869
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.831
GLIP_3952
Hypothetical protein.
  
  0.737
tolC
Outer membrane channel protein TolC.
 
 0.696
GLIP_3939
AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.664
mepB
Multidrug/solvent efflux pump membrane transporter mepB.
  
  0.661
arpC
Antibiotic efflux pump outer membrane protein ArpC.
  
  0.623
GLIP_2780
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  0.602
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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