STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_0802ABC transporter related. (229 aa)    
Predicted Functional Partners:
GLIP_0804
Hypothetical protein.
 
  0.987
GLIP_0803
Hypothetical protein.
  0.986
GLIP_0801
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.955
GLIP_2004
ABC transporter permease.
 
 0.948
sapD
Peptide transport system ATP-binding protein sapD; Belongs to the ABC transporter superfamily.
 
    
0.907
GLIP_2003
ABC transporter ATP-binding protein.
 
  0.859
msbA
ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
0.849
GLIP_2405
Sulfonate/nitrate/taurine transport system ATP-binding protein.
 
      0.823
lolC-2
Lipoprotein-releasing system transmembrane protein lolC.
  0.808
nrtC
Nitrate transport ATP-binding protein nrtC.
 
      0.791
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.