STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspAStarvation sensing protein RspA. (405 aa)    
Predicted Functional Partners:
GLIP_1213
Myo-inositol 2-dehydrogenase.
 
     0.833
uxaA
Altronate hydrolase.
    
 0.816
uxuB
Fructuronate reductase.
 
  
 0.770
mtlK
Mannitol 2-dehydrogenase.
 
  
 0.735
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
 0.729
gnd
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
  0.714
GLIP_1212
Hypothetical protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.708
GLIP_0018
Hypothetical protein.
 
  
 0.704
GLIP_4290
Amidohydrolase 2.
 
  
 0.666
GLIP_2955
Regucalcin.
 
  
 0.639
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.