STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauDTaurine dioxygenase. (308 aa)    
Predicted Functional Partners:
fucA
L-fuculose-phosphate aldolase.
 
     0.841
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE.
  
  
  0.759
GLIP_1345
Transcriptional regulator.
 
     0.752
GLIP_1355
Flavin reductase domain protein FMN-binding.
  
  
 0.722
cmpB
Bicarbonate transport system permease protein CmpB.
  
 
 0.695
rplK
Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
  
  0.694
nrtD
Nitrate transport ATP-binding protein nrtD.
 
 
 0.641
GLIP_1357
Phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase, large terminal subunit.
  
  
  0.624
ppsE
Phenolpthiocerol synthesis type-I polyketide synthase E.
  
  
 0.621
GLIP_1058
Hypothetical protein.
  
  
 0.621
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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