STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lly4-hydroxyphenylpyruvate dioxygenase. (365 aa)    
Predicted Functional Partners:
hmgA-2
Homogentisate 1,2-dioxygenase.
 
 0.999
aspC
Aspartate aminotransferase.
  
 
 0.968
GLIP_1446
Hypothetical protein.
 
  
 0.964
maiA
Maleylacetoacetate isomerase.
 
  
 0.953
phhA
Phenylalanine-4-hydroxylase.
 
  
 0.953
GLIP_1575
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 
 0.874
dat
D-alanine transaminase.
     
 0.869
GLIP_2131
Amidase; Belongs to the amidase family.
  
 
  0.867
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.779
hisC-2
Histidinol-phosphate aminotransferase.
    
 0.779
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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