STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_1750CcmA protein. (307 aa)    
Predicted Functional Partners:
GLIP_1751
ABC-2 type transport system permease protein.
 
 0.995
GLIP_1752
ABC-type transport system involved in gliding motility auxiliary component-like protein.
 
   
 0.952
GLIP_0357
Antibiotic transport system permease protein.
 
 
 0.949
GLIP_1753
Hypothetical protein.
 
     0.944
nrtD
Nitrate transport ATP-binding protein nrtD.
 
   
 
0.875
GLIP_3819
Hypothetical protein.
  
 
0.714
msbA
ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
0.695
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.678
GLIP_0117
ATP-binding cassette, subfamily B, bacterial.
    
0.672
GLIP_0949
ATP-binding cassette, subfamily B, bacterial.
    
0.672
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.