pilE-2 protein (Aliiglaciecola lipolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pilE-2

Type IV pilus assembly protein PilE. (155 aa)

Predicted Functional Partners:

pilW

0.958

pilY1

0.955

pilV

0.950

pilX

0.825

pilM

0.784

pilN

0.782

pilO

0.773

pilQ

0.717

pilD

0.710

fimT

0.701

Your Current Organism:

Aliiglaciecola lipolytica

NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fimT	pilE-2	GLIP_2488	GLIP_1796	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilE.	0.701
fimT	pilM	GLIP_2488	GLIP_3452	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilM.	0.671
fimT	pilN	GLIP_2488	GLIP_3451	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilN.	0.770
fimT	pilO	GLIP_2488	GLIP_3450	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilO.	0.777
fimT	pilQ	GLIP_2488	GLIP_3448	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilQ.	0.573
fimT	pilV	GLIP_2488	GLIP_1792	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilV.	0.825
fimT	pilW	GLIP_2488	GLIP_1793	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilW.	0.875
fimT	pilY1	GLIP_2488	GLIP_1795	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilY1.	0.798
pilD	pilE-2	GLIP_0522	GLIP_1796	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilE.	0.710
pilD	pilM	GLIP_0522	GLIP_3452	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilM.	0.810
pilD	pilN	GLIP_0522	GLIP_3451	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilN.	0.564
pilD	pilO	GLIP_0522	GLIP_3450	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilO.	0.595
pilD	pilQ	GLIP_0522	GLIP_3448	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilQ.	0.684
pilE-2	fimT	GLIP_1796	GLIP_2488	Type IV pilus assembly protein PilE.	Type IV fimbrial biogenesis protein FimT.	0.701
pilE-2	pilD	GLIP_1796	GLIP_0522	Type IV pilus assembly protein PilE.	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.710
pilE-2	pilM	GLIP_1796	GLIP_3452	Type IV pilus assembly protein PilE.	Type IV pilus assembly protein PilM.	0.784
pilE-2	pilN	GLIP_1796	GLIP_3451	Type IV pilus assembly protein PilE.	Type IV pilus assembly protein PilN.	0.782
pilE-2	pilO	GLIP_1796	GLIP_3450	Type IV pilus assembly protein PilE.	Type IV pilus assembly protein PilO.	0.773
pilE-2	pilQ	GLIP_1796	GLIP_3448	Type IV pilus assembly protein PilE.	Type IV pilus assembly protein PilQ.	0.717
pilE-2	pilV	GLIP_1796	GLIP_1792	Type IV pilus assembly protein PilE.	Type IV pilus assembly protein PilV.	0.950