Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GLIP_0392 | msbA | GLIP_0392 | GLIP_2012 | Hypothetical protein. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.738 |
| GLIP_0392 | ppsE | GLIP_0392 | GLIP_1057 | Hypothetical protein. | Phenolpthiocerol synthesis type-I polyketide synthase E. | 0.431 |
| GLIP_0802 | GLIP_1859 | GLIP_0802 | GLIP_1859 | ABC transporter related. | ATP-binding cassette, subfamily B, bacterial. | 0.541 |
| GLIP_0802 | msbA | GLIP_0802 | GLIP_2012 | ABC transporter related. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.849 |
| GLIP_1106 | msbA | GLIP_1106 | GLIP_2012 | ATPase central domain-containing protein. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.781 |
| GLIP_1859 | GLIP_0802 | GLIP_1859 | GLIP_0802 | ATP-binding cassette, subfamily B, bacterial. | ABC transporter related. | 0.541 |
| GLIP_1859 | lpxK | GLIP_1859 | GLIP_2011 | ATP-binding cassette, subfamily B, bacterial. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.471 |
| GLIP_1859 | msbA | GLIP_1859 | GLIP_2012 | ATP-binding cassette, subfamily B, bacterial. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.784 |
| GLIP_2010 | csgA | GLIP_2010 | GLIP_2008 | Hypothetical protein; Belongs to the UPF0434 family. | C-factor. | 0.773 |
| GLIP_2010 | kdsB | GLIP_2010 | GLIP_2009 | Hypothetical protein; Belongs to the UPF0434 family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.862 |
| GLIP_2010 | lpxK | GLIP_2010 | GLIP_2011 | Hypothetical protein; Belongs to the UPF0434 family. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.820 |
| GLIP_2010 | msbA | GLIP_2010 | GLIP_2012 | Hypothetical protein; Belongs to the UPF0434 family. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.791 |
| csgA | GLIP_2010 | GLIP_2008 | GLIP_2010 | C-factor. | Hypothetical protein; Belongs to the UPF0434 family. | 0.773 |
| csgA | kdsB | GLIP_2008 | GLIP_2009 | C-factor. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.773 |
| csgA | lpxK | GLIP_2008 | GLIP_2011 | C-factor. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.773 |
| csgA | msbA | GLIP_2008 | GLIP_2012 | C-factor. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.805 |
| csgA | ppsE | GLIP_2008 | GLIP_1057 | C-factor. | Phenolpthiocerol synthesis type-I polyketide synthase E. | 0.881 |
| cvaB | msbA | GLIP_3561 | GLIP_2012 | Colicin V secretion/processing ATP-binding protein cvaB. | ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.900 |
| kdsB | GLIP_2010 | GLIP_2009 | GLIP_2010 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Hypothetical protein; Belongs to the UPF0434 family. | 0.862 |
| kdsB | csgA | GLIP_2009 | GLIP_2008 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | C-factor. | 0.773 |
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