STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_2053Hypothetical protein. (439 aa)    
Predicted Functional Partners:
GLIP_2052
Hypothetical protein.
 
 
 
 0.991
GLIP_1418
XRE family transcriptional regulator.
   
 
 0.849
GLIP_3229
XRE family transcriptional regulator.
   
 
 0.849
GLIP_3903
XRE family transcriptional regulator.
   
 
 0.849
GLIP_4144
XRE family transcriptional regulator.
   
 
 0.849
GLIP_1625
Hypothetical protein.
 
 
 0.832
GLIP_3603
Hypothetical protein.
 
 
 0.826
GLIP_3580
Membrane associated protein containing xre-family DNA-binding HTH domain.
  
 
 0.802
GLIP_2054
Glutamate synthase; NADPH; Belongs to the glutamate synthase family.
       0.522
GLIP_2055
2-hydroxy-3-oxopropionate reductase.
       0.488
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.