STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_2119Peptidase S1/S6, chymotrypsin/Hap. (289 aa)    
Predicted Functional Partners:
GLIP_1818
Secreted serine protease; Belongs to the peptidase S8 family.
   
 0.957
GLIP_2120
Hypothetical protein.
 
   0.703
GLIP_0465
1-alkyl-2-acetylglycerophosphocholine esterase.
  
 
  0.668
ftsK
DNA translocase ftsK.
    
   0.606
GLIP_4256
TonB-dependent receptor.
  
 
   0.543
fimV
Pilus assembly protein FimV.
   
 0.515
GLIP_0208
Hypothetical protein.
  
 
   0.505
ppsE
Phenolpthiocerol synthesis type-I polyketide synthase E.
  
 
 0.504
GLIP_3403
Hypothetical protein.
  
  
  0.494
pel
Pectate lyase.
     
 0.474
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.