STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_2138Hypothetical protein. (357 aa)    
Predicted Functional Partners:
GLIP_4110
Hypothetical protein.
    
  0.770
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
  
    0.744
GLIP_3128
Hypothetical protein.
    
  0.631
GLIP_3635
Phospholipase D/Transphosphatidylase.
    
  0.631
GLIP_2338
Conjugative transfer protein TraD.
    
   0.549
uspE
Universal stress protein E.
       0.530
fnr
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
    
  0.506
GLIP_0465
1-alkyl-2-acetylglycerophosphocholine esterase.
    
  0.477
GLIP_2251
Hypothetical protein.
 
  
  0.400
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.