STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_2338Conjugative transfer protein TraD. (606 aa)    
Predicted Functional Partners:
GLIP_4368
Restriction endonuclease.
   
 
 0.926
traI
Conjugal transfer pilus assembly protein TraI.
 
   
 0.920
traC
Conjugal transfer ATP-binding protein TraC.
 
  
 0.861
GLIP_0778
Transglycosylase SLT domain, putative.
 
   
 0.808
traH
Conjugative transfer pilus assembly protein TraH.
 
   
 0.801
traB
Conjugal transfer pilus assembly protein TraB.
 
     0.795
GLIP_0774
Sex pilus assembly.
 
     0.792
traU
Conjugal transfer pilus assembly protein TraU.
 
     0.792
GLIP_2373
Hypothetical protein.
 
     0.792
traN
Conjugal transfer mating pair stabilization protein TraN.
 
     0.791
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.