STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimTType IV fimbrial biogenesis protein FimT. (184 aa)    
Predicted Functional Partners:
pilW
Type IV pilus assembly protein PilW.
 
  
 0.875
pilV
Type IV pilus assembly protein PilV.
 
  
 0.825
pilP
Type IV pilus assembly protein PilP.
  
  
 0.800
pilY1
Type IV pilus assembly protein PilY1.
 
  
 0.798
pilO
Type IV pilus assembly protein PilO.
 
   
 0.777
pilN
Type IV pilus assembly protein PilN.
 
   
 0.770
pilE-2
Type IV pilus assembly protein PilE.
 
  
 0.701
pilM
Type IV pilus assembly protein PilM.
 
   
 0.671
GLIP_0906
Hypothetical protein.
 
     0.666
GLIP_0050
Hypothetical protein.
  
   
 0.652
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.