STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_3222Poly(beta-D-mannuronate) lyase. (766 aa)    
Predicted Functional Partners:
alyA
Alginate lyase.
  
  
  0.820
GLIP_4169
Hypothetical protein.
  
  
  0.816
alyA-2
Alginate lyase.
 
  
  0.810
GLIP_2719
Hypothetical protein.
 
     0.786
exuT
MFS transporter, ACS family, hexuronate transporter.
 
    0.780
kdgF
Pectin degradation protein kdgF.
 
     0.777
uxuR
Uxu operon transcriptional regulator.
 
     0.724
uxuR-2
GntR family transcriptional regulator, uxuAB operon transcriptional repressor.
 
     0.723
GLIP_3512
Hypothetical protein.
  
     0.717
GLIP_0461
TonB-dependent receptor.
  
     0.616
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.