STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_3340Hypothetical protein. (252 aa)    
Predicted Functional Partners:
GLIP_3339
Hypothetical protein.
       0.791
GLIP_1424
Hypothetical protein.
  
     0.731
GLIP_3338
Hypothetical protein.
 
    0.683
GLIP_0540
Hypothetical protein.
  
     0.676
GLIP_0541
Hypothetical protein.
  
     0.645
GLIP_0688
Predicted acetyltransferase, GNAT family protein.
  
     0.640
GLIP_1732
Outer membrane protein; Belongs to the skp family.
    
 
 0.638
GLIP_3695
Polysaccharide deacetylase.
  
     0.629
GLIP_1429
TPR domain protein.
  
     0.606
GLIP_1677
Hypothetical protein.
  
     0.603
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.