STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilMType IV pilus assembly protein PilM. (354 aa)    
Predicted Functional Partners:
pilN
Type IV pilus assembly protein PilN.
 
 0.998
pilQ
Type IV pilus assembly protein PilQ.
 
 
 0.995
pilO
Type IV pilus assembly protein PilO.
 
 
 0.993
pilP
Type IV pilus assembly protein PilP.
 
 
 0.986
GLIP_0050
Hypothetical protein.
  
 
   0.937
GLIP_1152
Hypothetical protein.
  
 0.931
pilC
Type IV pilus assembly protein PilC.
 
 
 
 0.883
GLIP_3033
Twitching motility protein PilU; Type IV pili.
  
  
 0.834
gspE
Probable general secretion pathway protein E.
 
   
 0.825
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.810
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.