STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynjBProtein ynjB. (407 aa)    
Predicted Functional Partners:
GLIP_3956
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.965
fbpC
Fe(3+) ions import ATP-binding protein FbpC.
 
   
 0.928
ynjF
Inner membrane protein ynjF; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.916
merA
Mercuric reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
   
 0.827
GLIP_3960
TonB-dependent receptor.
 
     0.758
GLIP_3958
Hypothetical protein.
 
     0.748
GLIP_1990
Hypothetical protein.
 
   
 0.674
xthA
Exodeoxyribonuclease III.
      0.642
GLIP_3953
Hypothetical protein.
 
     0.592
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.