STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadHInner membrane transport permease yadH. (256 aa)    
Predicted Functional Partners:
nodI-2
Nod factor export ATP-binding protein I.
 
 0.980
GLIP_1049
ABC transporter, ATP-binding protein.
 
 0.777
GLIP_1944
Hypothetical protein.
  
  
 0.630
GLIP_0112
Iodotyrosine dehalogenase 1.
  
  
 0.623
GLIP_4026
Hypothetical protein.
       0.609
nodI
Nod factor export ATP-binding protein I.
 
 
 0.591
GLIP_0358
Antibiotic transport system ATP-binding protein.
 
 
 0.586
GLIP_1750
CcmA protein.
 
 
 0.582
GLIP_4023
Hypothetical protein.
       0.572
kpsM
Polysialic acid transport protein kpsM.
    
  0.556
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.