STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_4188Hypothetical protein. (256 aa)    
Predicted Functional Partners:
GLIP_1818
Secreted serine protease; Belongs to the peptidase S8 family.
   
 0.957
GLIP_0465
1-alkyl-2-acetylglycerophosphocholine esterase.
    
  0.614
ftsK
DNA translocase ftsK.
    
   0.606
fimV
Pilus assembly protein FimV.
   
 0.515
pel
Pectate lyase.
     
 0.474
GLIP_2377
Hypothetical protein.
   
  0.471
GLIP_2925
Hypothetical protein.
   
  0.471
mutH
DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.
       0.469
alyA
Alginate lyase.
   
  0.467
alyA-2
Alginate lyase.
   
  0.467
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.