STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLIP_4293Altronate dehydratase. (339 aa)    
Predicted Functional Partners:
GLIP_4290
Amidohydrolase 2.
 
     0.787
GLIP_3633
SAF domain protein.
  
     0.775
GLIP_4291
D-threo-aldose 1-dehydrogenase.
 
     0.751
GLIP_4294
Transcriptional regulator KdgR.
 
     0.712
GLIP_4292
Hypothetical protein.
       0.678
GLIP_3861
Hypothetical protein.
 
     0.574
fabG-8
3-oxoacyl-[acyl-carrier-protein] reductase.
    
  0.558
GLIP_4286
Ureidoglycolate lyase.
 
     0.527
rhaM
L-rhamnose mutarotase.
     
 0.523
fucP-2
MFS transporter, FHS family, L-fucose permease.
       0.502
Your Current Organism:
Aliiglaciecola lipolytica
NCBI taxonomy Id: 1127673
Other names: A. lipolytica E3, Aliiglaciecola lipolytica E3, Glaciecola lipolytica E3, marine bacterium E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.