STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY07477.1Hypothetical protein. (324 aa)    
Predicted Functional Partners:
EKY07478.1
Pyridoxal-dependent decarboxylase, sheet domain protein; KEGG: coc:Coch_1868 3.4e-247 Orn/DAP/Arg decarboxylase 2; K01585 arginine decarboxylase; Psort location: Cytoplasmic, score: 8.96.
       0.565
Your Current Organism:
Capnocytophaga sp. F0381
NCBI taxonomy Id: 1127692
Other names: C. sp. oral taxon 332 str. F0381, Capnocytophaga sp. oral taxon 332 str. F0381
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