Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY04360.1Conjugative transposon TraM protein; Psort location: OuterMembrane, score: 9.49. (515 aa)    
Predicted Functional Partners:
EKY04361.1
Conjugative transposon TraN protein.
 
     0.951
EKY04362.1
Hypothetical protein.
 
    0.950
EKY04364.1
Conjugative transposon protein TraQ family protein.
 
     0.938
EKY03322.1
Conjugative transposon TraK protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.822
EKY04363.1
Hypothetical protein; KEGG: shi:Shel_09410 1.2e-08 DNA primase, catalytic core; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96.
 
     0.800
EKY04219.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.797
EKY03321.1
Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.796
EKY04220.1
Conjugative transposon protein TraE; KEGG: fjo:Fjoh_1975 0.0071 potassium-transporting ATPase subunit A K01546; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.795
EKY04218.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.786
EKY04217.1
Conjugative transposon protein TraI family protein.
 
     0.784
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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